Birds of Morro Bay: A Day on the Estuary Trails

If you’re dreaming of a day spent outdoors with binoculars in hand, Morro Bay on California’s Central Coast is the perfect place to start. Tucked along the Pacific Flyway, this small coastal town plays host to thousands of migratory birds every year—and somehow, it still feels like a hidden gem.

A few years ago, I moved to the area, and before long, birding became part of my daily routine. With a backyard that is a bird sanctuary, it’s impossible not to get hooked. These days, grabbing my binoculars is as automatic as grabbing my keys—I’m always ready for a surprise visitor overhead.

Great Blue Heron landing near Great Egret

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Some of my favorite locals include the graceful Great Egret, the towering Great Blue Heron, the quick-footed Greater Yellowlegs, and the ever-majestic Brown Pelican.

I also keep an eye—and ear—out for the Belted Kingfisher, a small but spirited bird that often gives itself away with a rattling call before you even spot it perched on a boat pole.

And then there are the thrilling moments: watching a Red-shouldered Hawk glide above the estuary or catching a glimpse of a Bald Eagle soaring high. One morning, I even spotted a flock of American White Pelicans in flight—so breathtaking I nearly stumbled trying to get a closer look.

Great Horned Owl at Morro Bay in eucalyptus

Plan Your Perfect Day of Birding

This guide will lead you through a full day of birding adventures around Morro Bay—from misty morning trails to golden sunsets over the mudflats. Along the way, you’ll discover scenic walks, top birding hotspots, and a few favorite places to recharge with a good meal between sightings.

Morro Bay Estuary sunrise at Elfin Forest

Just after sunrise, the estuary comes alive: a soft mist floats over the water, the calls of sandpipers and gulls fill the air, and the flap of wings echoes across the flats. It’s in these early, quiet hours that Morro Bay reveals its wild side—and reminds you why it’s considered one of California’s top birding destinations.

Recognized as an estuary of national significance, Morro Bay’s landscapes—salt marshes, mudflats, coastal bluffs, and sandspits—create a haven for over 200 bird species each year. Migrating shorebirds, overwintering ducks, woodland warblers—you’ll find them all here. Even if you’re new to birding, it’s impossible not to pause in wonder as a peregrine falcon flashes past Morro Rock or a marbled godwit probes the soft, wet sand.

Whether you’re an avid birder chasing a life list or simply looking for a peaceful, nature-filled escape, birding near Morro Bay promises adventure, discovery, and moments you’ll never forget.

Great Blue Heron in eucalyptus at Morro Bay Marina

Early Morning: Heron Rookery and Morro Bay Marina Peninsula Trail

Start your day early at the Heron Rookery near the Central Coast Natural History Museum. Look for the cluster of skeletal trees—long ago altered by the droppings of Great Blue Herons, Great Egrets, and Snowy Egrets. Even now, these majestic birds continue to roost here and across the road along the Morro Bay Marina. From the marina’s large parking lot, it’s easy to spot their nests silhouetted against the morning sky.

After enjoying the rookery, head to the nearby Marina Peninsula Trail. This flat, 0.5- to 0.7-mile boardwalk loop winds through salt marsh, mudflats, and pickleweed, offering close-up views of several coastal habitats. Watch for Snowy Egrets hunting in the marsh, ducks and loons paddling through the marina, and listen for the rattling call of a Belted Kingfisher perched on a boat pole—often heard before seen.

Optional Breakfast Stop:
Refuel at Bayside Cafe, a favorite local spot for fresh seafood and hearty chowder, located right by the marina.

foggy kayakers and a heron in Morro Bay

Adventure Option:
Feeling adventurous? Rent a kayak from the Kayak Shack or book a private birdwatching tour with Central Coast Kayaks. Gliding quietly through the estuary by kayak gives you the best chance to spot pelicans, ospreys, peregrine falcons, and a wide variety of shorebirds, especially during the winter migration season.

Pelicans over Foggy Morro Rock

Morning: Cloisters Park and Morro Strand State Beach

After the rookery, I like to head north toward Cloisters Park, tucked just off Highway 1. This quiet neighborhood park, with its small pond and nearby dunes, attracts a lively mix of birds. Keep an eye out for White- and Golden-crowned Sparrows, California Thrashers, Yellow-rumped Warblers, and sometimes even a Black-crowned Night-Heron lurking near the water.

After exploring the pond and paved trails, follow any path down to the beach. Here, the real highlight is spotting the endangered Western Snowy Plover. These small, sandy-colored birds dart back and forth across the shoreline, playing a playful game of chase with the waves. It’s a joy to watch—but remember to stay clear of their protected nesting areas. The snowy plover is listed as a “species of special concern” in California, and ongoing efforts help protect their fragile population.

Sanderling closeup Morro Strand

For even more coastal birding, head a little further north to Morro Strand State Beach. Park at the day-use lot or near Beachcomber Drive and walk out to the sand. Seasonal pools often form here, attracting gulls, terns, and a surprising variety of shorebirds—sometimes including rare visitors like Pectoral Sandpipers or Virginia Rails. Even a short visit can reveal an impressive diversity packed into this dynamic stretch of beach.

Adventure Option:

For a free guided walk, check out the Central Coast State Parks Association event calendar. Their Adventures with Nature Programs offer guided walks and talks led by California State Park staff and volunteers—an excellent way to learn even more about the birds and ecosystems of Morro Bay.

boardwalk trail Elfin Forest sunset

Noon: Elfin Forest Boardwalk

Next, make the short drive to the Elfin Forest in Los Osos—a 1-mile, ADA-accessible boardwalk that loops through a surreal landscape of gnarled coast live oaks and coastal scrub.

This 90-acre natural area, located on the edge of the Morro Bay Estuary, boasts incredible biodiversity in a compact space, featuring over 200 plant species, 110 bird species, and a diverse mix of mammals, reptiles, and rare butterflies.

Stepping onto the boardwalk feels like entering an enchanted tunnel. Listen for the descending trill of wrentits, the raspy call of California scrub-jays, and the cheerful chatter of white-crowned sparrows in the underbrush. I even heard my first California Thrasher here.

Bring a good pair of binoculars, especially when you reach Bush Lupine Point or Siena’s View, where you can scan the back bay for long-billed curlews, American white pelicans, and many other shorebirds.

Insider Tips: Park near the 16th Street entrance for easy access. Interpretive signs along the boardwalk turn your walk into a self-guided nature tour.

Adventure Option:
Every 3rd Thursday, free nature walks are offered by Friends of the Elfin Forest (check elfin-forest.org for updates and reservations).

Still craving more adventure? Explore additional scenic routes in the Morro Bay Hiking Guide.

White-crowned Sparrow in coastal sage Slfin Forest

Lunch Break in Los Osos – Baywood Park

After your morning birding adventure, head down to Los Osos – Baywood—just a five-minute drive—for a well-deserved lunch break. Los Osos has no shortage of great options to choose from.

If you’re after a quick caffeine fix or a light bite, swing by Nautical Bean by the Baywood Pier. This charming coffee shack, open until 2 PM, serves excellent espresso drinks and sandwiches, with unbeatable views of the bay from its outdoor seating area.

Craving something heartier? Noi’s 2nd Street Cafe dishes out delicious Thai food, while Beerwood, a laid-back beer garden gastropub, is perfect if you’re in the mood for a craft beer and a juicy burger. Or grab a gourmet sandwich from High Market & Deli and pair it with a glass of local wine for a more leisurely lunch.

Choices in Baywood are truly mouthwatering—and if you happen to be birding on a Monday, don’t miss the Baywood Farmer’s Market from 2-4 pm. You can pick up fresh fruit, enjoy a slice of pizza or pie, and enjoy live music right by the bay.

Blue-winged Teal reflection, Sweet Springs

Afternoon: Sweet Springs Nature Preserve

For the afternoon, head over to Sweet Springs Nature Preserve in Los Osos—a peaceful 32-acre sanctuary where salt marsh, freshwater ponds, and cypress forest come together. Flat trails weave through the preserve, offering freshwater views, marshy edges, and estuary overlooks that are perfect for birding.

Morro Rock Estuary reflection at Sweet Springs

Sweet Springs is beautiful any time of day, but if you’re staying in the area for a few days, I highly recommend coming back early in the morning, too—you’ll catch a completely different scene. Expect to see cinnamon teals, northern pintails, and buffleheads paddling across the ponds, while warblers dart through the eucalyptus trees. Great egrets and great blue herons quietly patrol the marsh edges, hunting for their next meal.

In winter, listen for the honking calls of brant geese echoing across the estuary. And if you visit around sunset or after dark, you might be lucky enough to hear the deep, haunting call of a Great Horned Owl echoing through the trees as it searches for a mate.

Golden sunset over Baywood Park, Los Osos

Late Afternoon: Back Bay Mudflats at Baywood Park

To end the day, head back to Baywood Park and visit the Audubon Observation Deck—a small, tucked-away platform perfect for spotting shorebirds, ducks, Brant geese, gulls, and terns. You can easily walk to this overlook from the Baywood Pier or drive directly there (see directions below).

As the sun dips and the tide ebbs, make your way toward the Baywood Pier. The back bay mudflats come alive at low tide. Hundreds of sandpipers, godwits, and willets feed feverishly, while terns and gulls wheel overhead. Stay through sunset if you can. Watching the mudflats glow gold while flocks rise in swirling patterns is something you won’t soon forget.

Living nearby, I often end my days here if the sunset looks promising—and it never disappoints.

Afterward, you’ve earned a great dinner. Head into Morro Bay to treat yourself to a fabulous meal by the water.

Tips:

• Audubon’s 4th Street Overlook: Located at 1120 4th Street, Los Osos.
• 4th Street approach: Park at the end of 4th Street, walk past the guardrail across a small parking lot, then down a 50-foot paved path to the deck.
• 3rd Street approach: Drive to the north end of 3rd Street, turn right on Santa Lucia Avenue (a single-lane dirt road), and park in the small lot at the end.
• Pro Tip: Check tide charts before you go—low tide brings the best bird activity.

Herons and egrets rookery at Morro Bay Marina

Birding Culture: Morro Bay Bird Festival & More

Birding around Morro Bay isn’t just about spotting birds—it’s about being part of a vibrant, welcoming community. The Morro Coast Audubon Society plays a huge role, maintaining local preserves and leading free bird walks year-round.

One of the highlights of the year is the Morro Bay Bird Festival, held every January. I’ve attended the festival twice, and it’s truly an outstanding event for anyone who loves nature. I’m already counting down the days to the next one. Field trips, kayak tours, and workshops bring together birders of all levels. You might find yourself kayaking alongside loons and pelicans, or photographing raptors diving over the estuary.

During the festival, expert guides lead bird walks at every key site, helping you sharpen your skills and discover hidden corners of the bay you might otherwise miss. It’s an inspiring way to connect with the land, the birds, and a whole community of fellow nature enthusiasts.

And if you’re visiting outside of the festival, don’t worry—locals offer weekly bird walks throughout the year, most of them free and beginner-friendly.

If you’re building a whole trip, you’ll find even more adventures waiting in this Things to Do in Morro Bay guide.

Cormorants on rocks in Morro Bay at sunset

Seasonal Birding Calendar

Birding near Morro Bay changes beautifully with the seasons. Here’s what you can expect throughout the year:

Fall (Sep–Nov):

• Migratory shorebirds arrive in waves.
• Raptors like peregrine falcons and merlins pass through.

Winter (Dec–Feb):

• Peak season for birding.
• Thousands of ducks, geese, and shorebirds blanket the estuary.
• The Morro Bay Bird Festival happens in January.

Spring (Mar–May):

• Heron and egret rookeries bustle with nesting activity.
• Northbound shorebirds stop to refuel.
• Songbirds return and fill the air with music.

Summer (Jun–Aug):

• Resident species dominate.
• Brown pelicans, terns, and ospreys steal the show.
• Early southbound shorebirds start arriving by July.

Pro Birding Tips for Morro Bay

Gear to Bring:

• Binoculars (essential).
• A spotting scope (great for distant views).
• Dress in layers—cool mornings, sunny afternoons are the norm.
• Download the Merlin and eBird apps for easy bird ID and sight logging.

California Thrasher coastal sage Morro Bay

Final Thoughts: Birding in Morro Bay

From the whispering trees of Sweet Springs to the bustling mudflats of Baywood Park, birding in Morro Bay feels like pure magic.

You’ll find more than just an incredible diversity of birds—you’ll discover a welcoming community, stunning coastal landscapes, and countless moments to slow down and reconnect with nature. Whether you’re a seasoned birder or a casual observer, Morro Bay has something to offer.

So pack your binoculars, charge your camera, and get ready. The birds and the beauty are waiting.